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The protein structure alignment is calculated on the following chains: 1adj:D; 1h4q:B; 1qf6:A; 1ati:A;

#segment    S1                             S2                S3      S4                    S5                 S6                S7                  S8      S9         S10           S11           S12        S13        S14         S15         S16                S17      S18                        S19          S20         S21           
1adjD  {  3}AVRGTKDLFGKELRMHQRIVATARKVLE{0}AAGALELVTPIFEE{17}EMFTF{4}GRSLTLRPEGTAAMVRAYL{7}PQPVRLWMAGPMFRAE{4}GRYRQFHQVNYEALG{3}PILDAEAVVLLYECLKE{1}GLRRL{0}KVKLSSV{98}VRTAFEVHHEE{2}AQSALGGGGRY{0}DGLSELL{ 3}RVPGVGFA{3}ERVALALE{11}PDLYLIPLT{0}EEAVAEAFYLAEALRP{3}AEYALA{4}AKGLEEALKRGAAFAGFLGEDELR{0}AGEVTLKRLA{1}GEQVRLSRE{0}EVPGYLLQAL{ 1}
1h4qB  { 27}PVRGTIVVRPYGYAIWENIQQVLDRMFK{0}ETGHQNAYFPLFIP{ 7}ELAVV{8}EEPLAVRPTSETVIGYMWS{7}DLPQLLNQWGNVVRWE{6}LRTSEFLWQEGHTAH{6}EEEVRRMLSIYARLARE{1}AAIPV{0}IEGLKTE{ 6}AVYTTTIEALM{3}KALQAGTSHYL{1}ENFARAF{12}YVHTTSWG{2}WRFIGAII{17}IQVVIVPIY{5}ERVLEAAQGLRQALLA{4}VHLDDR{5}GYKFHEWELKGVPFRVELGPKDLE{0}GGQAVLASRL{0}GGKETLPLA{0}ALPEALPGKL{92}
1qf6A  {257}EAPGMVFWHNDGWTIFRELEVFVRSKLK{0}EYQYQEVKGPFMMD{15}AMFTT{3}NREYCIKPMNCPGHVQIFN{7}DLPLRMAEFGSCHRNE{8}MRVRGFTQDDAHIFC{5}RDEVNGCIRLVYDMYST{0}FGFEK{0}IVVKLST{39}YGPKIEFTLYD{3}RAWQCGTVQLD{0}FSLPSRL{12}VPVMIHRA{5}ERFIGILT{13}VQVVIMNIT{0}DSQSEYVNELTQKLSN{3}RVKADL{5}GFKIREHTLRRVPYMLVCGDKEVE{0}SGKVAVRTRR{0}GKDLGSMDV{1}EVIEKLQQEI{10}
1atiA  { 26}GLQGVYDYGPLGVELKNNLKQAWWRRNV{2}RDDMEGLDASVLTH{28}MMFQD{8}GLLAYLRPETAQGIFVNFK{8}KLGFGIAQIGKAFRNE{7}FRVREFEQMEIEYFV{5}EYWHRYWVEERLKWWQE{0}MGLSR{2}LVPYQQP{ 7}AKATVDILYRF{2}GSLELEGIAQR{1}DFDLGSH{34}VPYVIEPS{3}DRGVLALL{26}IKVAVIPLV{3}PEITEYAKRLKARLLA{5}VLYEDT{3}GKAYRRHDEVGTPFAVTVDYDTIG{9}KDTVTVRDRD{0}TMEQIRLHV{1}ELEGFLRERL{ 2}
ColorPDBAligned Chain/Segments

residues at approximate pivot positions
common core regions

Download a UCSF Chimera script for publication ready visualization and multiple analysis tools here. Start chimera and use "Open" menu to open the downloaded script. Please note, you must have access to the internet to download the aligned structures.

Note: Flexibility is detected in one or more input structures where modified coordinates are used in the alignment. No other chains or ligands except the master chains in structure alignment are shown.
tRNAsynthetase_hc.pdb
1adjD-ali.pdb   
1h4qB-ali.pdb   
1qf6A-ali.pdb   
1atiA-ali.pdb   
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