The protein structure alignment is calculated on the following chains: 1a9n:B; 2err:A; 1yty:A; 2kg1:A; 1urn:A(11-16,40-46,55-60,76-86, in grey);
After structure superposition, other chains that are added to the superimposed structures are: 1a9n:Q; 2err:B; 1yty:C; 2kg1:B; 1urn:P.
| /1a9nBQ.pdb/ /B/ 6 11 16 21 26 31 36 41 46 51 56 61 66 71 76 81 86 91 96 /Q/ 0 5 10 15 20
IRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRG CCUGGUAUUGCAGUACCUCCAGGU |
| /2errAB.pdb/ /A/ 109 114 119 124 129 134 139 144 149 154 159 164 169 174 179 184 189 194 /B/ 197 202
NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM UGCAUGU |
| /1ytyAC.pdb/ /A/ 6 11 16 21 26 31 36 41 46 51 56 61 66 71 76 81 86 91 96 101 106 111 116 121 126 131 136 141 146 151 156 161 166 171 176 181 186 /C/ 1 6
DNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYF UGCUGUUUU |
| /2kg1AB.pdb/ /A/ 277 282 287 292 297 302 307 312 317 322 327 332 337 342 347 352 357 362 367 372 377 /B/ 1 6
GDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNGAYSSQVMQGMG AGGGAU |
| /1urnAP.pdb/ /A/ 2 7 12 17 22 27 32 37 42 47 52 57 62 67 72 77 82 87 92 97 /P/ 1 6 11 17
AVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKM AAUCCAUUGCACUCGGAUUU |
| Color | PDB | Aligned Chain/Segments | Other Chains | Show Ligands |
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common core regions
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Download a UCSF Chimera script for publication ready visualization and multiple analysis tools here.
Start chimera and use "Open" menu to open the downloaded script. Please note, you must have access to the internet to download the aligned structures.
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