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POSA results (for branch2 highlighted in green in the guide tree):

Partial order structure alignment: superimposed PDB and 3D visualization in Jmol; Common core (78 aa, RMSD 1.88 Å)
Download partial order alignment in: text, graph and PDB format.

Guide tree: more


The protein structure alignment is based on protein structures defined as below:

IndexPDBChainSegmentsReferenceOther Chains
1.
2.
3.

You can change the input parameters (except the PDB column) and run POSA again.
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More information on the input protein structures: more