The protein structure alignment is calculated on the following chains: 2d9h:A; 2adr:A; 4gzn:C; 1x6e:A; 2cot:A; 2drp:A(110-135, in grey);
After structure superposition, other chains that are added to the superimposed structures are: 4gzn:A,B; 2drp:B,C.
Protein structure alignment in short-format (display amino acids in the alignment only):
| /2drpABC.pdb/ /A/ 110 | TYRCKVCSRVYTHISNFCRHYVTSHK | Equivalent-residues RMSD Identity(%) Similarity(%) P-value |
| /2d9hA.pdb/ /A/ 38 | RFPCEFCGKRFEKPDSVAAHRSKSHP | 26 0.89 19.23 38.46 2.96e-07 |
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| /2drpABC.pdb/ /A/ 110 | TYRCKVCSRVYTHISNFCRHYVTSHK | Equivalent-residues RMSD Identity(%) Similarity(%) P-value |
| /2adrA.pdb/ /A/ 131 | PYPCGLCNRAFTRRDLLIRHAQKIHS | 26 0.78 30.77 42.31 8.81e-11 |
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| /2drpABC.pdb/ /A/ 110 | TYRCKVCSRVYTHISNFCRHYVTSHK | Equivalent-residues RMSD Identity(%) Similarity(%) P-value |
| /4gznCAB.pdb/ /C/ 139 | PFFCNFCGKTYRDASGLSRHRRAHLG | 26 1.28 23.08 30.77 1.53e-08 |
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| /2drpABC.pdb/ /A/ 110 | TYRCKVCSRVYTHISNFCRHYVTSHK | Equivalent-residues RMSD Identity(%) Similarity(%) P-value |
| /1x6eA.pdb/ /A/ 14 | PYGCVECGKAFSRSSILVQHQRVHTG | 26 1.56 19.23 34.62 7.97e-06 |
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| /2drpABC.pdb/ /A/ 110 | TYRCKVCSRVYTHISNFCRHYVTSHK | Equivalent-residues RMSD Identity(%) Similarity(%) P-value |
| /2cotA.pdb/ /A/ 18 | RYKCDECGKSFSHSSDLSKHRRTHTG | 26 1.67 26.92 50.00 4.40e-05 |
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Protein structure alignment in long-format (display gapped full length protein):
| /2drpABC.pdb/ /A/ 103 | ftkegeh-------------------------------------TYRCKVCSRVYTHISNFCRHYVTSHKrnvkvypcpfcfkeftrkdnmtahvkiihkxx--------------- | Equivalent-residues RMSD Identity(%) Similarity(%) P-value |
| /2d9hA.pdb/ /A/ 1 | -------gssgssglqceicgftcrqkaslnwhqrkhaetvaalRFPCEFCGKRFEKPDSVAAHRSKSHP--------------------------------alllapqessgpssg | 26 0.89 19.23 38.46 2.96e-07 |
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| /2drpABC.pdb/ /A/ 103 | ftkegeh-----------------------------TYRCKVCSRVYTHISNFCRHYVTSHKrnvkvypcpfcfkeftrkdnmtahvkiihkxx----- | Equivalent-residues RMSD Identity(%) Similarity(%) P-value |
| /2adrA.pdb/ /A/ 102 | -------rsfvcevctrafarqehlkrhyrshtnekPYPCGLCNRAFTRRDLLIRHAQKIHS--------------------------------gnlge | 26 0.78 30.77 42.31 8.81e-11 |
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| /2drpABC.pdb/ /A/ 103 | ftkegeh---TYRCKVCSRVYTHISNFCRHYVTSHKrnvkvypcpfcfkeftrkdnmtahvkiihkxx----------------------------------- | Equivalent-residues RMSD Identity(%) Similarity(%) P-value |
| /4gznCAB.pdb/ /C/ 136 | -------serPFFCNFCGKTYRDASGLSRHRRAHLG--------------------------------yrprscpecgkcfrdqsevnrhlkvhqnkpxxxxx | 26 1.28 23.08 30.77 1.53e-08 |
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| /2drpABC.pdb/ /A/ 103 | ftkegeh-------------TYRCKVCSRVYTHISNFCRHYVTSHKrnvkvypcpfcfkeftrkdnmtahvkiihkxx--------------------------------- | Equivalent-residues RMSD Identity(%) Similarity(%) P-value |
| /1x6eA.pdb/ /A/ 1 | -------gssgssgihsgekPYGCVECGKAFSRSSILVQHQRVHTG--------------------------------ekpykclecgkafsqnsglinhqrihtsgpssg | 26 1.56 19.23 34.62 7.97e-06 |
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| /2drpABC.pdb/ /A/ 103 | ftkegeh-----------------TYRCKVCSRVYTHISNFCRHYVTSHKrnvkvypcpfcfkeftrkdnmtahvkiihkxx---------------------------------- | Equivalent-residues RMSD Identity(%) Similarity(%) P-value |
| /2cotA.pdb/ /A/ 1 | -------gssgssgrsewqqrerrRYKCDECGKSFSHSSDLSKHRRTHTG--------------------------------ekpykcdecgkafiqrshlighhrvhtgsgpssg | 26 1.67 26.92 50.00 4.40e-05 |
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Download a UCSF Chimera script for publication ready visualization and multiple analysis tools here.
Start chimera and use "Open" menu to open the downloaded script. Please note, you must have access to the internet to download the aligned structures.
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