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The protein structure alignment is calculated on the following chains: 3ngb:G; 4j6r:G; 4jm2:E;

After structure superposition, other chains that are added to the superimposed structures are: 3ngb:H,L; 4j6r:H,L; 4jm2:A,B.

 /3ngbGHL.pdb/ /G/ 44   49   54   59   64   69   74   79   84   89   94   99   104  109  114  119  124  202  207  212  217  222  227  232  237  242  247  252  257  262  267  272  277  282  287  292  297  324  329  334  339  344  349  354  360  365  370  375  380  385  390  395  406  411  416  421  426  431  436  441  446  451  456  461  466  471  476  481  486  491  762  886  /H/ 1    6    11   16   21   26   31   36   41   46   51   55   60   65   70   75   80   82C  87   92   97   100B 103  108  113  118  123  128  133  138  143  148  153  158  163  168  173  178  183  188  193  198  203  208  213  /L/ 3    8    13   18   23   28   35   40   45   50   55   60   65   70   75   80   85   90   99   104  109  114  119  124  129  134  139  144  149  154  159  164  169  174  179  184  189  194  199  204  209  214  572  
VWKDADTTLFCASDAKAHETEVHNVWATHACVPTDPNPQEIHLENVTENFNMWKNNMVEQMQEDVISLWDQSLQPCVKLTGGSVIKQACPKISFDPIPIHYCTPAGYVILKCNDKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNGDIRKAYCEINGTKWNKVLKQVTEKLKEHFNNKTIIFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNNTCIGNETMKGCNGTITLPCKIKQIINMWQGTGQAMYAPPIDGKINCVSNITGILLTRDGGANNTSNETFRPGGGNIKDNWRSELYKYKVVQIEXXXXXXXXXXXX QVQLVQSGGQMKKPGESMRISCRASGYEFIDCTLNWIRLAPGKRPEWMGWLKPRGGAVNYARPLQGRVTMTRDVYSDTAFLELRSLTVDDTAVYFCTRGKNCDYNWDFEHWGRGTPVIVSSPSTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKAEPKSC VLTQSPGTLSLSPGETAIISCRTSQYGSLAWYQQRPGQAPRLVIYSGSTRAAGIPDRFSGSRWGPDYNLTISNLESGDFGVYYCQQYEFFGQGTKVQVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLRSPVTKSFNRGECXXXXX
 /4j6rGHL.pdb/ /G/ 44   49   54   59   64   69   74   79   84   89   94   99   104  109  114  119  124  202  207  212  217  222  227  232  237  242  247  252  257  262  267  272  277  282  287  292  297  328  333  338  343  348  353  359  364  369  374  379  384  389  394  399  404  415  420  425  430  435  440  445  450  455  460  465  470  475  480  485  490  503  508  513  /H/ 1    6    11   16   21   26   31   36   41   46   51   55   60   65   70   75   80   82C  87   92   97   100B 103  108  113  118  123  128  133  138  143  148  153  158  163  168  173  178  183  188  193  198  203  208  213  304  309  /L/ 1    6    11   16   21   26   31   36   41   46   51   56   61   66   71   76   81   86   91   100  105  110  115  120  125  130  135  140  145  150  155  160  165  170  175  180  185  190  195  200  205  210  301  
VWRDADTTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTGGSAITQACPKVSFEPIPIHYCTPAGFAILKCKDEGFNGTGLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSENITNNAKIIIVQLVQPVTIKCIRDIRQAHCNVTRSRWNKTLQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEFFYCNTSGLFNSTWYVNSTWNDTNDTITLPCRIKQIINMWQRAGQAMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETFRPGGGDMRDNWRSELYKYKVVEIEXXXXXXXXXXXXXX EVQFVQSGAEVKKPGASVRVSCEASGYSFTDYVLQWIRQAPGQRPEWMGWIKPERGAVSYAPQFQGRLTLTRDLYTETAYMHFKNLRSDDTAIYYCARGVRRDASWWLQFWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKXXXXXXXXXX EIVMTQSPVTVSVSRGGTATLSCRASQGVGSDVAWYQHKPGQTPRLLIYGASTRASGVPERFSGSGFHVDFTLSISGLQPEDVAIYYCQQYETFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECXXXXX
 /4jm2EAB.pdb/ /E/ 89   94   99   104  109  114  119  124  129  198  203  208  213  218  223  228  233  238  243  248  253  258  263  268  273  278  283  288  293  298  303  327  332  337  342  347  352  358  363  368  373  378  383  388  393  401  406  412  417  422  427  432  437  442  447  452  457  462  467  472  477  482  487  501  506  511  516  521  526  /A/ 1    6    11   16   21   26   31   35A  35F  39   44   49   54   59   64   69   74   79   82B  86   91   96   100A 100F 101  106  111  116  121  126  138  143  148  153  158  163  168  173  178  183  188  193  198  203  208  213  /B/ 1    6    11   16   21   26   31   36   41   46   51   56   61   66   71   76   81   86   91   96   101  106  111  116  121  126  131  136  141  146  151  156  161  166  171  176  181  186  191  196  201  206  211  
VTEHFNMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVGSGSCDTSVITQACPKISFEPIPIHYCAPAGFAILKCNDKTFNGKGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSDNFTNNAKTIIVQLKESVEINCTRPNNNTIGDIRQAHCNISRAKWNDTLKQIVIKLREQFENKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNNNTEGSNNTEGNTITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGINENGTEIFRPGGGDMRDNWRSELYKYKVVKIXXXXXXXXXXXXXXXXXXXXXXXXXXX QLQMQESGPGLVKPSETLSLSCTVSGDSIRGGEWGDKDYHWGWVRHSAGKGLEWIGSIHWRGTTHYKESLRRRVSMSIDTSRNWFSLRLASVTAADTAVYFCARHRHHDVFMLVPIAGWFDVWGPGVQVTVSSASTKGPSVFPLAPGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK EIVMTQSPDTLSVSPGETVTLSCRASQNINKNLAWYQYKPGQSPRLVIFETYSKIAAFPARFVASGSGTEFTLTINNMQSEDVAVYYCQQYEEWPRTFGQGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
ColorPDBAligned Chain/SegmentsOther ChainsShow Ligands

common core regions

Download a UCSF Chimera script for publication ready visualization and multiple analysis tools here. Start chimera and use "Open" menu to open the downloaded script. Please note, you must have access to the internet to download the aligned structures.
PGT135_VRC01_VRC23_G.pdb
3ngbGHL.pdb   
4j6rGHL.pdb   
4jm2EAB.pdb   
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